3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04535

Details:

PFam ID : PF04535

PFam Domain Description : Domain of unknown function (DUF588)

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 376

Average sequence length: 135.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04535	D3YPL5_HHV1_1_197	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04535	C5XIF2_SORBI_1_97	99.2

Sequence based PCA Plot of the family - PF04535 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay