3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04534

Details:

PFam ID : PF04534

PFam Domain Description : Herpesvirus UL56 protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 7

Average sequence length: 159.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04534	D3YPL5_HHV1_1_197	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04534	D3YPL5_HHV1_1_197	100

Sequence based PCA Plot of the family - PF04534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=99 Length=8
Motif2 Start=173 Length=8
Motif3 Start=21 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay