3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04531

Details:

PFam ID : PF04531

PFam Domain Description : Bacteriophage holin

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 109

Average sequence length: 77.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04531	E3PRW9_CLOSD_2_61	40.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04531	C6GRG2_STRSX_3_82	100

Sequence based PCA Plot of the family - PF04531 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay