3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04530

Details:

PFam ID : PF04530

PFam Domain Description : Viral Beta C/D like family

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 16

Average sequence length: 112.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04530	Q02476_9VIRU_3_131	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04530	Q02476_9VIRU_3_131	100

Sequence based PCA Plot of the family - PF04530 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=91 Length=8
Motif3 Start=7 Length=8
Motif4 Start=117 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay