3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04527

Details:

PFam ID : PF04527

PFam Domain Description : Drosophila Retinin like protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 76

Average sequence length: 74.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04527	D6WFU1_TRICA_25_98	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04527	B4L9L8_DROMO_27_97	93.3

Sequence based PCA Plot of the family - PF04527 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay