3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04525

Details:

PFam ID : PF04525

PFam Domain Description : Tubby C 2

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 364

Average sequence length: 158.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04525	E3CCF9_STRPA_1_66	59.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04525	Q84TW5_ORYSJ_9_90	100

Sequence based PCA Plot of the family - PF04525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=8
Motif2 Start=33 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay