3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04517

Details:

PFam ID : PF04517

PFam Domain Description : Microvirus lysis protein (E), C terminus

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 15

Average sequence length: 39.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04517	E4Z193_OIKDI_9_119	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04517	Q2LMB7_9VIRU_34_74	92.8

Sequence based PCA Plot of the family - PF04517 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay