3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04516

Details:

PFam ID : PF04516

PFam Domain Description : CP2 transcription factor

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 162

Average sequence length: 202.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04516	E4Z193_OIKDI_9_119	25.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04516	A7SFH3_NEMVE_62_297	100

Sequence based PCA Plot of the family - PF04516 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=102 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay