3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04514

Details:

PFam ID : PF04514

PFam Domain Description : Bluetongue virus non-structural protein NS2

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 21

Average sequence length: 304.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04514	A2TLM8_9REOV_1_211	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04514	Q80RH3_AHSV3_1_363	100

Sequence based PCA Plot of the family - PF04514 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay