3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04511

Details:

PFam ID : PF04511

PFam Domain Description : Der1-like family

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 348

Average sequence length: 171.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04511	A5DNB2_PICGU_11_253	89.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04511	C4PY32_SCHMA_13_236	100

Sequence based PCA Plot of the family - PF04511 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=222 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay