3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04510

Details:

PFam ID : PF04510

PFam Domain Description : Family of unknown function (DUF577)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 38

Average sequence length: 152.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04510	Q9FG46_ARATH_404_492	36.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04510	D7M9T1_ARALL_1_49	100

Sequence based PCA Plot of the family - PF04510 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay