3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04509

Details:

PFam ID : PF04509

PFam Domain Description : CheC-like family

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 608

Average sequence length: 37.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04509	E6MC44_STALU_1_57	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04509	Q9RPJ0_9FIRM_59_95	100

Sequence based PCA Plot of the family - PF04509 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=8
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay