3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04508

Details:

PFam ID : PF04508

PFam Domain Description : Viral A-type inclusion protein repeat

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 27

Average sequence length: 21.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04508	E6MC44_STALU_1_57	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04508	Q8JL89_9POXV_635_657	92.3

Sequence based PCA Plot of the family - PF04508 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay