3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04505

Details:

PFam ID : PF04505

PFam Domain Description : Interferon-induced transmembrane protein

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 238

Average sequence length: 82

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04505	C9K046_HUMAN_81_126	52.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04505	E5XKQ2_9ACTO_70_165	100

Sequence based PCA Plot of the family - PF04505 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=61 Length=8
Motif3 Start=15 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay