3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04502

Details:

PFam ID : PF04502

PFam Domain Description : Family of unknown function (DUF572)

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 339

Average sequence length: 288.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04502	B2W9Z6_PYRTR_4_65	90.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04502	E4Y9L5_OIKDI_1_429	99.4

Sequence based PCA Plot of the family - PF04502 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=116 Length=8
Motif2 Start=159 Length=8
Motif3 Start=98 Length=11
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay