3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04501

Details:

PFam ID : PF04501

PFam Domain Description : Baculovirus major capsid protein VP39

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 40

Average sequence length: 270.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04501	P89276_GVXN_1_152	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04501	Q9DVV4_9BBAC_1_319	100

Sequence based PCA Plot of the family - PF04501 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=30 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay