3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04500

Details:

PFam ID : PF04500

PFam Domain Description : Acetamidase/Formamidase family

Number of Sequence in 50% Dataset : 261

Number of Sequence in Full Dataset : 550

Average sequence length: 60.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04500	B5DVR1_DROPS_202_247	98.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04500	B0WND0_CULQU_1404_1463	100

Sequence based PCA Plot of the family - PF04500 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=11 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay