3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04495

Details:

PFam ID : PF04495

PFam Domain Description : GRASP55/65 PDZ-like domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 196

Average sequence length: 119.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04495	E7R698_PICAD_109_282	68.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04495	E7R698_PICAD_109_282	100

Sequence based PCA Plot of the family - PF04495 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=50 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay