3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04494

Details:

PFam ID : PF04494

PFam Domain Description : WD40 associated region in TFIID subunit

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 164

Average sequence length: 129.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04494	A2DNU1_TRIVA_42_173	78.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04494	Q5CSI1_CRYPV_105_254	100

Sequence based PCA Plot of the family - PF04494 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=97 Length=8
Motif3 Start=58 Length=8
Motif4 Start=39 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay