3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04493

Details:

PFam ID : PF04493

PFam Domain Description : Endonuclease V

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 380

Average sequence length: 193.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04493	Q4STI0_TETNG_63_182	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04493	C1EH02_MICSR_44_290	100

Sequence based PCA Plot of the family - PF04493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=121 Length=8
Motif2 Start=16 Length=8
Motif3 Start=208 Length=8
Motif4 Start=234 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay