3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04488

Details:

PFam ID : PF04488

PFam Domain Description : Glycosyltransferase sugar-binding region containing DXD motif

Number of Sequence in 50% Dataset : 186

Number of Sequence in Full Dataset : 832

Average sequence length: 94.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04488	A1TNW1_ACIAC_61_126	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04488	E9GEI8_DAPPU_117_253	100

Sequence based PCA Plot of the family - PF04488 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=30 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay