3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04484

Details:

PFam ID : PF04484

PFam Domain Description : Family of unknown function (DUF566)

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 101

Average sequence length: 271.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04484	A8I4R7_CHLRE_295_405	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04484	D8QXF5_SELML_185_568	100

Sequence based PCA Plot of the family - PF04484 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=7 Length=17
Motif3 Start=102 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay