3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04478

Details:

PFam ID : PF04478

PFam Domain Description : Mid2 like cell wall stress sensor

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 57

Average sequence length: 98.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04478	Q758Q5_ASHGO_266_417	36.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04478	E7RA12_PICAD_406_522	100

Sequence based PCA Plot of the family - PF04478 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay