3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04473

Details:

PFam ID : PF04473

PFam Domain Description : Transglutaminase-like domain

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 53

Average sequence length: 146.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04473	B1HVT2_LYSSC_3_101	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04473	C6A2F8_THESM_295_450	100

Sequence based PCA Plot of the family - PF04473 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=224 Length=8
Motif4 Start=181 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay