3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04464

Details:

PFam ID : PF04464

PFam Domain Description : CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase

Number of Sequence in 50% Dataset : 436

Number of Sequence in Full Dataset : 887

Average sequence length: 328.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04464	E1KAA5_9FIRM_267_443	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04464	D2N0D2_CAMJE_347_643	100

Sequence based PCA Plot of the family - PF04464 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=169 Length=8
Motif2 Start=7 Length=11
Motif3 Start=274 Length=11
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay