3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04455

Details:

PFam ID : PF04455

PFam Domain Description : LOR/SDH bifunctional enzyme conserved region

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 103

Average sequence length: 100.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04455	F0WYY9_9STRA_44_151	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04455	F0WYY9_9STRA_44_151	100

Sequence based PCA Plot of the family - PF04455 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=34 Length=8
Motif3 Start=25 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay