3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04454

Details:

PFam ID : PF04454

PFam Domain Description : Encapsulating protein for peroxidase

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 125

Average sequence length: 241.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04454	B0BYJ3_ACAM1_1_134	77.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04454	O67639_AQUAE_1_267	100

Sequence based PCA Plot of the family - PF04454 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=127 Length=8
Motif2 Start=181 Length=8
Motif3 Start=1 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay