3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04453

Details:

PFam ID : PF04453

PFam Domain Description : Organic solvent tolerance protein

Number of Sequence in 50% Dataset : 210

Number of Sequence in Full Dataset : 558

Average sequence length: 376.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04453	D8LR28_ECTSI_185_326	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04453	O67097_AQUAE_254_586	99.2

Sequence based PCA Plot of the family - PF04453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=17
Motif2 Start=260 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay