3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04451

Details:

PFam ID : PF04451

PFam Domain Description : Large eukaryotic DNA virus major capsid protein

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 128

Average sequence length: 173.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04451	C7EYJ1_FRG3V_1_88	84

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04451	E4WLT8_9PHYC_231_340	100

Sequence based PCA Plot of the family - PF04451 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=307 Length=8
Motif3 Start=54 Length=11
Motif4 Start=266 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay