3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04446

Details:

PFam ID : PF04446

PFam Domain Description : tRNAHis guanylyltransferase

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 224

Average sequence length: 123.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04446	D2UXG3_NAEGR_59_242	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04446	A8NVB3_COPC7_1_103	100

Sequence based PCA Plot of the family - PF04446 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=73 Length=8
Motif3 Start=131 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay