3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04443

Details:

PFam ID : PF04443

PFam Domain Description : Acyl-protein synthetase, LuxE

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 175

Average sequence length: 317.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04443	D0JB40_BLASB_4_120	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04443	D0LXI9_HALO1_42_411	100

Sequence based PCA Plot of the family - PF04443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=244 Length=8
Motif4 Start=210 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay