3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04442

Details:

PFam ID : PF04442

PFam Domain Description : Cytochrome c oxidase assembly protein CtaG/Cox11

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 363

Average sequence length: 145.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04442	C6UNA2_HODCD_25_174	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04442	C6UNA2_HODCD_25_174	100

Sequence based PCA Plot of the family - PF04442 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=8
Motif2 Start=13 Length=8
Motif3 Start=141 Length=8
Motif4 Start=96 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay