3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04438

Details:

PFam ID : PF04438

PFam Domain Description : HIT zinc finger

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 434

Average sequence length: 30.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04438	Q75B58_ASHGO_205_672	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04438	A0BPH5_PARTE_1_20	96.3

Sequence based PCA Plot of the family - PF04438 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=8
Motif2 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay