3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04435

Details:

PFam ID : PF04435

PFam Domain Description : Domain of unknown function (DUF545)

Number of Sequence in 50% Dataset : 144

Number of Sequence in Full Dataset : 222

Average sequence length: 104.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04435	E3NFQ2_CAERE_2_77	81.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04435	E3LJ90_CAERE_298_430	100

Sequence based PCA Plot of the family - PF04435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay