3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04432

Details:

PFam ID : PF04432

PFam Domain Description : Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus

Number of Sequence in 50% Dataset : 198

Number of Sequence in Full Dataset : 504

Average sequence length: 166.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04432	B9FEG5_ORYSJ_241_335	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04432	D7J2H7_9BACE_164_362	100

Sequence based PCA Plot of the family - PF04432 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=86 Length=8
Motif3 Start=32 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay