3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04427

Details:

PFam ID : PF04427

PFam Domain Description : Brix domain

Number of Sequence in 50% Dataset : 169

Number of Sequence in Full Dataset : 803

Average sequence length: 193.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04427	Q5DF15_SCHJA_2_86	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04427	Q8IB26_PLAF7_52_281	95.1

Sequence based PCA Plot of the family - PF04427 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=163 Length=8
Motif3 Start=218 Length=8
Motif4 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay