3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04425

Details:

PFam ID : PF04425

PFam Domain Description : Bul1 N terminus

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 79

Average sequence length: 355.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04425	C5MB50_CANTT_239_304	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04425	E3REH2_PYRTT_119_252	100

Sequence based PCA Plot of the family - PF04425 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay