3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04422

Details:

PFam ID : PF04422

PFam Domain Description : Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 341

Average sequence length: 79.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04422	B5JPV2_9BACT_16_98	70.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04422	B5JPV2_9BACT_16_98	100

Sequence based PCA Plot of the family - PF04422 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=69 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay