3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04421

Details:

PFam ID : PF04421

PFam Domain Description : Mss4 protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 65

Average sequence length: 91.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04421	E1FTL0_LOALO_1_49	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04421	E1FK66_LOALO_13_143	100

Sequence based PCA Plot of the family - PF04421 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=85 Length=8
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay