3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04420

Details:

PFam ID : PF04420

PFam Domain Description : CHD5-like protein

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 117

Average sequence length: 151.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04420	C4PXY5_SCHMA_209_328	73.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04420	GET1_CANGA_6_189	100

Sequence based PCA Plot of the family - PF04420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=66 Length=8
Motif4 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay