3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04419

Details:

PFam ID : PF04419

PFam Domain Description : 4F5 protein family

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 197

Average sequence length: 36.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04419	D8M1Q1_BLAHO_1_81	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04419	Q0US32_PHANO_1_28	78

Sequence based PCA Plot of the family - PF04419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay