3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04418

Details:

PFam ID : PF04418

PFam Domain Description : Domain of unknown function (DUF543)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 143

Average sequence length: 73.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04418	D8M1Q1_BLAHO_1_81	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04418	E1Z8F5_9CHLO_22_107	100

Sequence based PCA Plot of the family - PF04418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay