3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04413

Details:

PFam ID : PF04413

PFam Domain Description : 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 731

Average sequence length: 179.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04413	D1ND57_HAEIF_20_130	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04413	D0P3N2_PHYIT_34_230	100

Sequence based PCA Plot of the family - PF04413 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8
Motif4 Start=101 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay