3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04410

Details:

PFam ID : PF04410

PFam Domain Description : Gar1/Naf1 RNA binding region

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 341

Average sequence length: 141.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04410	D7DTU5_METV3_164_520	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04410	Q19788_CAEEL_144_311	99.1

Sequence based PCA Plot of the family - PF04410 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=61 Length=8
Motif3 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay