3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04408

Details:

PFam ID : PF04408

PFam Domain Description : Helicase associated domain (HA2)

Number of Sequence in 50% Dataset : 336

Number of Sequence in Full Dataset : 2202

Average sequence length: 105.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04408	F2KRN4_ARCVE_1_164	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04408	B7FW57_PHATC_446_511	100

Sequence based PCA Plot of the family - PF04408 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=5 Length=8
Motif2 Start=103 Length=8
Motif3 Start=22 Length=8
Motif4 Start=36 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay