3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04406

Details:

PFam ID : PF04406

PFam Domain Description : Type IIB DNA topoisomerase

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 235

Average sequence length: 69.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04406	Q0TYH8_PHANO_43_81	30.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04406	TOP6A_HYPBU_72_154	100

Sequence based PCA Plot of the family - PF04406 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=31 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay