3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04404

Details:

PFam ID : PF04404

PFam Domain Description : ERF superfamily

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 253

Average sequence length: 154.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04404	Q14Q35_SPICI_10_165	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04404	A3X1N6_9BRAD_11_190	100

Sequence based PCA Plot of the family - PF04404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay