3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04399

Details:

PFam ID : PF04399

PFam Domain Description : Glutaredoxin 2, C terminal domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 93

Average sequence length: 124.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04399	D4DMI1_NEIEG_26_114	34.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04399	A3UQ95_VIBSP_89_223	100

Sequence based PCA Plot of the family - PF04399 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=14
Motif2 Start=1 Length=8
Motif3 Start=96 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay