3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04397

Details:

PFam ID : PF04397

PFam Domain Description : LytTr DNA-binding domain

Number of Sequence in 50% Dataset : 1070

Number of Sequence in Full Dataset : 2636

Average sequence length: 95.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04397	Q0C2H4_HYPNA_241_295	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04397	Q0C2H4_HYPNA_181_229	100

Sequence based PCA Plot of the family - PF04397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=32 Length=8
Motif3 Start=75 Length=11
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay