3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04392

Details:

PFam ID : PF04392

PFam Domain Description : ABC transporter substrate binding protein

Number of Sequence in 50% Dataset : 239

Number of Sequence in Full Dataset : 700

Average sequence length: 271.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04392	A9GBJ2_SORC5_1_112	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04392	F2G9W9_ALTMD_30_338	99.8

Sequence based PCA Plot of the family - PF04392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=240 Length=8
Motif2 Start=271 Length=8
Motif3 Start=1 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay